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                <text>Introducción Dossier AREA 27 “Procesos urbanos globales. Hacia un mundo mejor”</text>
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                <text>David Kullock, José Seguinot Barbosa</text>
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                <text>Cuando la Dirección de AREA propuso dedicar un número de la revista a un dossier titulado “Procesos urbanos globales. Hacia un mundo mejor” sabíamos que se enfrentaba un desafío singular, dado que la agenda académica urbanística que venía ampliamente dedicada a las crecientes amenazas del Cambio Climático, comenzaba a abocarse a las incógnitas sobre el futuro urbano que podría surgir tras la pandemia de la COVID-19. En ese escenario, proponer “la detección de fenómenos […] que incidan positivamente sobre la conformación y el futuro de los asentamientos humanos” resultaba temerario o, al menos, poco proclive a tener éxito. A pesar de ello y quizás incidido por los disloques personales que se acentuaron por la prolongación del aislamiento social durante el año 2021, las propuestas de artículos empezaron a llegar y alcanzaron a ser una veintena.</text>
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                <text>Diseño, area, arquitectura, dossier, introducción, reflexión</text>
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                <text>Universidad de Buenos Aires. Facultad de Arquitectura, Diseño y Urbanismo</text>
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                <text>Urban groups. The city. Urban sociology, Architecture</text>
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                <text>&lt;a href="https://publicacionescientificas.fadu.uba.ar/index.php/area/article/view/1919" target="_blank" rel="noreferrer noopener"&gt;https://publicacionescientificas.fadu.uba.ar/index.php/area/article/view/1919&lt;/a&gt;</text>
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                <text>David L Fisher, Alin Pavel, Stephen Malnick</text>
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                <text>QJM : monthly journal of the Association of Physicians</text>
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                <text>Multi-omic network signatures of disease</text>
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                <text>David L Gibbs, Lisa E Gralinski, Ralph S. Baric, Shannon K McWeeney</text>
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                <text>To better understand dynamic disease processes, integrated multi-omic methods are needed, yet comparing different types of omic data remains difficult. Integrative solutions benefit experimenters by eliminating potential biases that come with single omic analysis.We have developed the methods needed to explore whether a relationship exists between co-expression network models built from transcriptomic and proteomic data types, and whether this relationship can be used to improve the disease signature discovery process. A naïve, correlation based method is utilized for comparison. Using publicly available infectious disease time series data, we analyzed the related co-expression structure of the transcriptome and proteome in response to SARS-CoV infection in mice. Transcript and peptide expression data was filtered using quality scores and subset by taking the intersection on mapped Entrez IDs. Using this data set, independent co-expression networks were built.  The networks were integrated by constructing a bipartite module graph based on module member overlap, module summary correlation, and correlation to phenotypes of interest. Compared to the module level results, the naïve approach is hindered by a lack of correlation across data types, less significant enrichment results, and little functional overlap across data types. Our module graph approach avoids these problems, resulting in an integrated omic signature of disease progression, which allows prioritization across data types for down-stream experiment planning. Integrated modules exhibited related functional enrichments and could suggest novel interactions in response to infection. These disease and platform-independent methods can be used to realize the full potential of multi-omic network signatures.</text>
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                <text>2014</text>
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                <text>proteomics, Transcription, Genetic, transfection, Virology, omics, biomarkers</text>
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                <text>DOI: 10.3389/fgene.2013.00309</text>
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                <text>Frontiers in Genetics</text>
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                <text>Frontiers Media S.A.</text>
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                <text>Genetics</text>
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                <text>David L. Heymann, Guénaël Rodier</text>
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                <text>China</text>
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                <text>DOI: 10.3201/eid1002.031038</text>
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                <text>Emerging Infectious Diseases</text>
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                <text>Infectious and parasitic diseases, Medicine</text>
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                  <text>Dominio científico: Agricultura sostenible</text>
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                <text>The climatic-environmental significance, status and socio- economic perspective of the grown-shade coffee agroecosystems  in the central mountain region of Veracruz, Mexico</text>
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                <text>David Loreto, Manuel Esperón-Rodríguez, Víctor L. Barradas</text>
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                <text>Resumen . El clima y la vegetación coexisten en un equilibrio  dinámico. Sin embargo, la falta de vegetación puede causar  cambios climáticos locales y regionales. Los agroecosistemas  del café de sombra proveen recursos, servicios ambientales y  beneficios socio-económicos. Se encontró que la producción  de café ha disminuido pero su valor económico ha incre- mentado;  sin  embargo,  los  indicadores  socio-económicos   han disminuido. La alta tasa de deforestación está causando  cambios en los patrones de precipitación y en la frecuencia  de niebla, lo que contribuye a la crisis ambiental y socio- económica de la región. Este trabajo presenta un análisis de  la influencia del clima local y regional en el café cultivado a  sombra en el área central de Veracruz, así como los factores  que intervienen en el cambio de uso de suelo con las respec- tivas consecuencias para los productores de café.</text>
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                <text>Café cereza, Coffea arabica, agro, café cultivado a la sombra, ecosistemas, ingresos  y bienestar de los productores, unidades de producción</text>
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                <text>Investigaciones Geográficas</text>
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                <text>David M G Halpin, Claus F Vogelmeier, Alvar A Agusti</text>
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                <text>Archivos de bronconeumologia</text>
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              <elementText elementTextId="819">
                <text>David M Lewinsohn, Gwendolyn M Swarbrick, Meghan E Cansler, Megan D Null, Veena Rajaraman, Marisa M Frieder, David R Sherman, Shannon McWeeney, Deborah A. Lewinsohn</text>
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                <text>Identification of CD8(+) T cell antigens/epitopes expressed by human pathogens with large genomes is especially challenging, yet necessary for vaccine development. Immunity to tuberculosis, a leading cause of mortality worldwide, requires CD8(+) T cell immunity, yet the repertoire of CD8 antigens/epitopes remains undefined. We used integrated computational and proteomic approaches to screen 10% of the Mycobacterium tuberculosis (Mtb) proteome for CD8 Mtb antigens. We designed a weighting schema based upon a Multiple Attribute Decision Making:framework to select 10% of the Mtb proteome with a high probability of containing CD8(+) T cell epitopes. We created a synthetic peptide library consisting of 15-mers overlapping by 11 aa. Using the interferon-γ ELISPOT assay and Mtb-infected dendritic cells as antigen presenting cells, we screened Mtb-specific CD8(+) T cell clones restricted by classical MHC class I molecules (MHC class Ia molecules), that were isolated from Mtb-infected humans, against this library. Three novel CD8 antigens were unambiguously identified: the EsxJ family (Rv1038c, Rv1197, Rv3620c, Rv2347c, Rv1792), PE9 (Rv1088), and PE_PGRS42 (Rv2487c). The epitopes are B5701-restricted EsxJ24-34, B3905-restricted PE953-67, and B3514-restricted PE_PGRS4248-56, respectively. The utility of peptide libraries in identifying unknown epitopes recognized by classically restricted CD8(+) T cells was confirmed, which can be applied to other intracellular pathogens with large size genomes. In addition, we identified three novel Mtb epitopes/antigens that may be evaluated for inclusion in vaccines and/or diagnostics for tuberculosis.</text>
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                <text>DOI: 10.1371/journal.pone.0067016</text>
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                <text>PLoS ONE</text>
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                  <text>Dominio científico: Coronavirus</text>
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      <name>Text</name>
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        <name>Dublin Core</name>
        <description>The Dublin Core metadata element set is common to all Omeka records, including items, files, and collections. For more information see, http://dublincore.org/documents/dces/.</description>
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                <text>Effect of adeno-associated virus (AAV)-mediated overexpression of PEPCK-M (Pck2) on Clenbuterol-induced muscle growth.</text>
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              <elementText elementTextId="13264">
                <text>David M Loczenski-Brown, Sarah Jones, Jeni Luckett, Zoe Daniel, Madelaine C Brearley, Francis J. P. Ebling, Tim Parr, John M Brameld</text>
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            <description>An account of the resource</description>
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                <text>We previously identified PEPCK-M (encoded by the Pck2 gene) to be highly up-regulated in skeletal muscle of pigs treated with Ractopamine, an anabolic beta-adrenergic receptor agonist. To determine whether PEPCK-M had a causative role in modulating the skeletal muscle growth response to Ractopamine, we used adeno-associated virus 1 (AAV1) to over-express Pck2 (AAV-Pck2) in murine skeletal muscle. A contralateral limb design was employed, such that each mouse served as its own control (injected with a GFP-only expressing AAV1, labelled AAV-GFP). Daily injections of Clenbuterol (1 mg/kg for 21 days) or vehicle control were also carried out to assess the effects of AAV-Pck2 overexpression on the anabolic response to a beta-adrenergic agonist. AAV-Pck2 overexpression in leg muscles of male C57BL6/J mice for 4 weeks (6-10 weeks of age) increased Pck2 mRNA (~100-fold), protein (not quantifiable) and enzyme activity (~3-fold). There was a trend (p = 0.0798) for AAV-Pck2 overexpression to reduce TA muscle weights, but there was no significant effect on muscle fibre diameters or myosin heavy chain isoform (MyHC) mRNA expression. When skeletal muscle growth was induced by daily administration of Clenbuterol (for 21 days), overexpression of AAV-Pck2 had no effect on the growth response, nor did it alter the expression of Phosphoserine Aminotransferase-1 (Psat1) or Asparagine Synthetase (Asns) mRNA or the Clenbuterol-induced decreases in MyHC IIa and IIx mRNA expression (p = 0.0065 and p = 0.0267 respectively). However AAV-Pck2 overexpression reduced TA muscle weights (p = 0.0434), particularly in the Control (vehicle treated) mice (p = 0.059 for AAV x Clenbuterol interaction) and increased the expression of Seryl-tRNA Synthetase (Sars) mRNA (p = 0.0477). Hence, contrary to the original hypothesis, AAV-Pck2 overexpression reduced TA muscle weights and did not mimic or alter the muscle hypertrophic effects of the beta-adrenergic agonist, Clenbuterol.</text>
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                <text>DOI: 10.1371/journal.pone.0218970</text>
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                <text>PLoS ONE</text>
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                <text>Science, Medicine</text>
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                  <text>Dominio científico: Coronavirus</text>
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                <text>Coordinated Response to SARS, Vancouver, Canada</text>
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                <text>David M Patrick, Mel Krajden, Elizabeth Bryce, Allison McGeer, Diane L Roscoe, Robert C Brunham, Tim F. Booth, Martin Petric, Michael A Noble, Babak Pourbohloul, William R Bowie, Robert A. Parker, Danuta M Skowronski, Joan Tomblin, S. Aleina Tweed, Patricia Daly, Swee-Han Goh, Patrick W. Doyle, Tung C. Yang, Thomas L. Perry</text>
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                <text>Two Canadian urban areas received travelers with severe acute respiratory syndrome (SARS) before the World Health Organization issued its alert. By July 2003, Vancouver had identified 5 cases (4 imported); Toronto reported 247 cases (3 imported) and 43 deaths. Baseline preparedness for pandemic threats may account for the absence of sustained transmission and fewer cases of SARS in Vancouver.</text>
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                <text>2006</text>
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                <text>Outbreak, nosocomial infections, coronavirus, dispatch, SARS, emerging pathogens</text>
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                <text>DOI: 10.3201/eid1201.050327</text>
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                <text>Emerging Infectious Diseases</text>
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                <text>Centers for Disease Control and Prevention</text>
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                <text>Infectious and parasitic diseases, Medicine</text>
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              <description>An account of the resource</description>
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                  <text>Dominio científico: Coronavirus</text>
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                <text>Clinical Implications of Chloroquine and Hydroxychloroquine Ototoxicity for COVID-19 Treatment: A Mini-Review</text>
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                <text>David M. Baguley, Pattarawadee Prayuenyong, Anand V. Kasbekar</text>
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            <name>Description</name>
            <description>An account of the resource</description>
            <elementTextContainer>
              <elementText elementTextId="31993">
                <text>At this time of the COVID-19 pandemic, potentially effective treatments are currently under urgent investigation. Benefits of chloroquine and hydroxychloroquine for the treatment of COVID-19 infection have been proposed and clinical trials are underway. Chloroquine and hydroxychloroquine, typically used for the treatment of malaria and autoimmune diseases, have been considered for off-label use in several countries. In the literature, there are reports of ototoxic effects of the drugs causing damage to the inner ear structures, which then result in hearing loss, tinnitus, and/or imbalance. This mini-review represents a summary of the findings from a systematic search regarding ototoxicity of chloroquine and hydroxychloroquine in the published literature. The characteristics of sensorineural hearing loss and/or tinnitus after chloroquine or hydroxychloroquine treatment can be temporary but reports of persistent auditory and vestibular dysfunction exist. These are not frequent, but the impact can be substantial. Additionally, abnormal cochleovestibular development in the newborn was also reported after chloroquine treatment in pregnant women. The suggested dose of chloroquine for COVID-19 infection is considerably higher than the usual dosage for malaria treatment; therefore, it is plausible that the ototoxic effects will be greater. There are potential implications from this review for survivors of COVID-19 treated with chloroquine or hydroxychloroquine. Patient reports of hearing loss, tinnitus, or imbalance should be noted. Those with troublesome hearing loss, tinnitus and/or imbalance are encouraged to be referred for hearing evaluation and interventions once they are stable. Clinical trials of chloroquine or hydroxychloroquine should also consider including audiological monitoring in the protocol.</text>
              </elementText>
            </elementTextContainer>
          </element>
          <element elementId="40">
            <name>Date</name>
            <description>A point or period of time associated with an event in the lifecycle of the resource</description>
            <elementTextContainer>
              <elementText elementTextId="31994">
                <text>2020</text>
              </elementText>
            </elementTextContainer>
          </element>
          <element elementId="49">
            <name>Subject</name>
            <description>The topic of the resource</description>
            <elementTextContainer>
              <elementText elementTextId="31995">
                <text>tinnitus, Hearing Loss, chloroquine, hydroxychloroquine, ototoxicity, COVID-19</text>
              </elementText>
            </elementTextContainer>
          </element>
          <element elementId="43">
            <name>Identifier</name>
            <description>An unambiguous reference to the resource within a given context</description>
            <elementTextContainer>
              <elementText elementTextId="31996">
                <text>DOI: 10.3389/fpubh.2020.00252</text>
              </elementText>
            </elementTextContainer>
          </element>
          <element elementId="48">
            <name>Source</name>
            <description>A related resource from which the described resource is derived</description>
            <elementTextContainer>
              <elementText elementTextId="31997">
                <text>Frontiers in Public Health</text>
              </elementText>
            </elementTextContainer>
          </element>
          <element elementId="45">
            <name>Publisher</name>
            <description>An entity responsible for making the resource available</description>
            <elementTextContainer>
              <elementText elementTextId="31998">
                <text>Frontiers Media S.A.</text>
              </elementText>
            </elementTextContainer>
          </element>
          <element elementId="38">
            <name>Coverage</name>
            <description>The spatial or temporal topic of the resource, the spatial applicability of the resource, or the jurisdiction under which the resource is relevant</description>
            <elementTextContainer>
              <elementText elementTextId="31999">
                <text>Public aspects of medicine</text>
              </elementText>
            </elementTextContainer>
          </element>
        </elementContainer>
      </elementSet>
    </elementSetContainer>
  </item>
</itemContainer>
