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                  <text>Dominio científico: Coronavirus</text>
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                <text>Identification of turkey astrovirus and turkey coronavirus in an outbreak of Poult Enteritis and Mortality Syndrome</text>
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                <text>L.Y.B. Villarreal, MS Assayag, P. E. Brandão, JLV Chacón, AND Bunger, CS Astolfi-Ferreira, CR Gomes, RC Jones, AJP Ferreira</text>
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                <text>This article reports a survey on turkey astrovirus (TAstV) and turkey coronavirus (TCoV) infections with RT-PCR in 17 turkey flocks affected by acute enteritis and two apparently normal turkey flocks located in the Southeastern region of Brazil by PCR (TAstV and TCoV). Seven out of the 17 affected flocks were positive for TAstV and 14 for TCoV, with seven co-infections. In one of the two apparently normal flocks, a TAstV-TCoV co-infection was found. Although a definitive association of these agents and the signs can not be made, the implications of these findings are discussed.</text>
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                <text>astrovirus, coronavirus, Turkey, Enteritis, diagnosis</text>
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                <text>DOI: 10.1590/S1516-635X2006000200010</text>
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                <text>Brazilian Journal of Poultry Science</text>
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                <text>Fundação APINCO de Ciência e Tecnologia Avícolas</text>
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                <text>Veterinary medicine, Zoology, Animal culture</text>
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                <text>Annual tax compliance costs for small businesses: a survey of tax practitioners in South Africa</text>
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                <text>Sharon Smulders, Madeleine Stiglingh</text>
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                <text>This study provides a baseline measurement for annual tax compliance costs for small businesses. An empirical study performed amongst tax practitioners to identify and measure the annual tax compliance costs for small businesses throughout South Africa revealed that R7 030 per annum is the average fee that tax practitioners charge their small business clients to ensure that their tax returns (for four key taxes – income tax, provisional tax, value added tax and employees’ tax) are prepared, completed and submitted as SARS requires. From the perspective of time and cost, preparing, completing and submitting VAT returns takes the longest and costs the most. It is evident that, overall, the compliance costs are regressive: the smaller the business, the heavier the burden.</text>
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                <text>DOI: 10.4102/sajems.v11i3.464</text>
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                <text>South African Journal of Economic and Management Sciences</text>
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                <text>Economics as a science, Business, Management. Industrial management</text>
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                <text>Deeper understanding about the genetic structure of dengue virus using SVM</text>
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                <text>Choi Subin, Choi Hyunjin, Yoon Taeseon</text>
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                <text>Dengue fever, mainly found in the tropical and subtropical regions, is carried by mosquitoes. With the help of greenhouse effect, places considered to be a Dengue safe-zone are becoming more and more dangerous. Dengue fever shows similar aspects to MERS, which caused heavy casualties in South Korea; Dengue virus does not have clear treatments nor vaccines like MERS. Development of Dengue vaccine is actively investigated lately. However, it is not easy to succeed; the fact that Dengue’s 4 serotypes have different properties and that repeated infections worsen the symptoms. This research aims to analyze the 4 serotypes (DENV1, DENV2, DENV3, DENV4) using SVM and ANN algorithms to investigate the constraints in the development of Dengue’s vaccines and treatments.</text>
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                <text>2016</text>
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                <text>DOI: 10.1051/matecconf/20166901008</text>
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                <text>MATEC Web of Conferences</text>
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                <text>EDP Sciences</text>
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                <text>Engineering (General). Civil engineering (General)</text>
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                  <text>Dominio científico: Coronavirus</text>
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                <text>WATERS CARRYING CAPACITY FOR DEVELOPMENT OF SEAWEED CULTURE OF Eucheuma cottonii IN LUWU AND PALOPO DISTRICTS, BONE BAY, SOUTH SULAWESI</text>
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                <text>. Waluyo, . Yonvitner, Etty Riani, Taslim Arifin</text>
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                <text>In seaweed Eucheuma cottonii cultures, a water carrying capacity is an important factor to optimize the seaweed culture. Carrying capacity can be determined by an ecological footprint production (EFp) analysis. This research was conducted in May 2015 (1st transitional season) and September 2015 (2nd transitional season) in Luwu and Palopo distircts, South Sulawesi. Map and land use were analyzed using GIS (Geographic Information Systems). The result showed that the ecological foot-print production (EFP) in Luwu waters was 67.88 ton/capita/year or equivalent to 235,823.93 tons/ year. However, based on the analysis of the water availability for seaweed was 59,781.79 hectares, it can produce seaweed (biocapacity) for 1,437,779.60 tons/year and the number of farmers that allows for use the waters is 21,432 capita. The ecological footprint  production (EFp) in Palopo waters is 3.08 ton/capita/year, or equivalent to 4,589.99 tons/year. Water availability analysis is 1,771. 41 hectares are able to produce seaweed (biocapacity) for  18,287.46 ton/year and the number of far-mers that allows for use the waters is 635 farmers capita. The results comparison between biocapa-ci-ty and ecological footprint, ecological status for  Luwu and Palopo waters are still in sustainable use.</text>
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                <text>2017</text>
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                <text>seaweed cultivation, ecological footprint, waters carrying capacity</text>
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                <text>DOI: 10.29244/jitkt.v8i2.15802</text>
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                <text>E-Journal Ilmu dan Teknologi Kelautan Tropis</text>
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                <text>Bogor Agricultural University</text>
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                <text>Oceanography</text>
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              <elementText elementTextId="5135">
                <text>Jeremiah Athmer, Anthony R. Fehr, Matthew Grunewald, Everett Clinton Smith, Mark R. Denison, Stanley Perlman, Peter Palese</text>
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            <name>Description</name>
            <description>An account of the resource</description>
            <elementTextContainer>
              <elementText elementTextId="5136">
                <text>Coronavirus (CoV) replication and transcription are carried out in close proximity to restructured endoplasmic reticulum (ER) membranes in replication/transcription complexes (RTC). Many of the CoV nonstructural proteins (nsps) are required for RTC function; however, not all of their functions are known. nsp15 contains an endoribonuclease domain that is conserved in the CoV family. While the enzymatic activity and crystal structure of nsp15 are well defined, its role in replication remains elusive. nsp15 localizes to sites of RNA replication, but whether it acts independently or requires additional interactions for its function remains unknown. To begin to address these questions, we created an in situ tagged form of nsp15 using the prototypic CoV, mouse hepatitis virus (MHV). In MHV, nsp15 contains the genomic RNA packaging signal (P/S), a 95-bp RNA stem-loop structure that is not required for viral replication or nsp15 function. Utilizing this knowledge, we constructed an internal hemagglutinin (HA) tag that replaced the P/S. We found that nsp15-HA was localized to discrete perinuclear puncta and strongly colocalized with nsp8 and nsp12, both well-defined members of the RTC, but not the membrane (M) protein, involved in virus assembly. Finally, we found that nsp15 interacted with RTC-associated proteins nsp8 and nsp12 during infection, and this interaction was RNA independent. From this, we conclude that nsp15 localizes and interacts with CoV proteins in the RTC, suggesting it plays a direct or indirect role in virus replication. Furthermore, the use of in situ epitope tags could be used to determine novel nsp-nsp interactions in coronaviruses.</text>
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                <text>2017</text>
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            <name>Identifier</name>
            <description>An unambiguous reference to the resource within a given context</description>
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                <text>DOI: 10.1128/mBio.02320-16</text>
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            <description>A related resource from which the described resource is derived</description>
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                <text>mBio</text>
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            <name>Publisher</name>
            <description>An entity responsible for making the resource available</description>
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                <text>American Society for Microbiology</text>
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            <description>The spatial or temporal topic of the resource, the spatial applicability of the resource, or the jurisdiction under which the resource is relevant</description>
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                <text>Microbiology</text>
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            <name>Language</name>
            <description>A language of the resource</description>
            <elementTextContainer>
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                <text>EN</text>
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              <name>Title</name>
              <description>A name given to the resource</description>
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                  <text>Coronavirus</text>
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              <name>Description</name>
              <description>An account of the resource</description>
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                  <text>Dominio científico: Coronavirus</text>
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      <name>Text</name>
      <description>A resource consisting primarily of words for reading. Examples include books, letters, dissertations, poems, newspapers, articles, archives of mailing lists. Note that facsimiles or images of texts are still of the genre Text.</description>
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            <name>Title</name>
            <description>A name given to the resource</description>
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                <text>Antimalarial Activity of Ultra-Short Peptides</text>
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            <name>Creator</name>
            <description>An entity primarily responsible for making the resource</description>
            <elementTextContainer>
              <elementText elementTextId="5144">
                <text>María Yolanda Rios, A. Berenice Aguilar-Guadarrama, Rocío Argotte-Ramos, Lemuel Pérez-Picaso, Benjamín Velasco-Bejarano</text>
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            <name>Description</name>
            <description>An account of the resource</description>
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                <text>Ultra-short peptides 1-9 were designed and synthesized with phenylalanine, ornithine and proline amino acid residues and their effect on antimalarial activity was analyzed. On the basis of the IC50 data for these compounds, the effects of nature, polarity, and amino acid sequence on Plasmodium berghei schizont cultures were analyzed too. Tetrapeptides Phe-Orn-Phe-Orn (4) and Lys-Phe-Phe-Orn (5) showed a very important activity with IC50 values of 3.31 and 2.57 μM, respectively. These two tetrapeptides are candidates for subsequent in vivo assays and SARS investigations.</text>
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            <name>Date</name>
            <description>A point or period of time associated with an event in the lifecycle of the resource</description>
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                <text>2009</text>
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            <name>Subject</name>
            <description>The topic of the resource</description>
            <elementTextContainer>
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                <text>tetrapeptides, antimalarial activity, Plasmodium berghei, ultra-short peptides</text>
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            <name>Identifier</name>
            <description>An unambiguous reference to the resource within a given context</description>
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              <elementText elementTextId="5148">
                <text>DOI: 10.3390/molecules14125103</text>
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            <name>Source</name>
            <description>A related resource from which the described resource is derived</description>
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              <elementText elementTextId="5149">
                <text>Molecules</text>
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            </elementTextContainer>
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            <name>Publisher</name>
            <description>An entity responsible for making the resource available</description>
            <elementTextContainer>
              <elementText elementTextId="5150">
                <text>MDPI AG</text>
              </elementText>
            </elementTextContainer>
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            <description>The spatial or temporal topic of the resource, the spatial applicability of the resource, or the jurisdiction under which the resource is relevant</description>
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                <text>Organic chemistry</text>
              </elementText>
            </elementTextContainer>
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            <name>Language</name>
            <description>A language of the resource</description>
            <elementTextContainer>
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                <text>EN</text>
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              <name>Title</name>
              <description>A name given to the resource</description>
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                  <text>Coronavirus</text>
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              <name>Description</name>
              <description>An account of the resource</description>
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                  <text>Dominio científico: Coronavirus</text>
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      <name>Text</name>
      <description>A resource consisting primarily of words for reading. Examples include books, letters, dissertations, poems, newspapers, articles, archives of mailing lists. Note that facsimiles or images of texts are still of the genre Text.</description>
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      <elementSet elementSetId="1">
        <name>Dublin Core</name>
        <description>The Dublin Core metadata element set is common to all Omeka records, including items, files, and collections. For more information see, http://dublincore.org/documents/dces/.</description>
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          <element elementId="50">
            <name>Title</name>
            <description>A name given to the resource</description>
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              <elementText elementTextId="5153">
                <text>Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes</text>
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            <name>Creator</name>
            <description>An entity primarily responsible for making the resource</description>
            <elementTextContainer>
              <elementText elementTextId="5154">
                <text>Sergei Kliver, Mike Rayko, Alexey Komissarov, Evgeny Bakin, Daria Zhernakova, Kasavajhala Prasad, Catherine Rushworth, R. Baskar, Dmitry Smetanin, Jeremy Schmutz, Daniel S. Rokhsar, Thomas Mitchell-Olds, Ueli Grossniklaus, Vladimir Brukhin</text>
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            <name>Description</name>
            <description>An account of the resource</description>
            <elementTextContainer>
              <elementText elementTextId="5155">
                <text>Closely related to the model plant Arabidopsis thaliana, the genus Boechera is known to contain both sexual and apomictic species or accessions. Boechera retrofracta is a diploid sexually reproducing species and is thought to be an ancestral parent species of apomictic species. Here we report the de novo assembly of the B. retrofracta genome using short Illumina and Roche reads from 1 paired-end and 3 mate pair libraries. The distribution of 23-mers from the paired end library has indicated a low level of heterozygosity and the presence of detectable duplications and triplications. The genome size was estimated to be equal 227 Mb. N50 of the assembled scaffolds was 2.3 Mb. Using a hybrid approach that combines homology-based and de novo methods 27,048 protein-coding genes were predicted. Also repeats, transfer RNA (tRNA) and ribosomal RNA (rRNA) genes were annotated. Finally, genes of B. retrofracta and 6 other Brassicaceae species were used for phylogenetic tree reconstruction. In addition, we explored the histidine exonuclease APOLLO locus, related to apomixis in Boechera, and proposed model of its evolution through the series of duplications. An assembled genome of B. retrofracta will help in the challenging assembly of the highly heterozygous genomes of hybrid apomictic species.</text>
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            <name>Date</name>
            <description>A point or period of time associated with an event in the lifecycle of the resource</description>
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                <text>2018</text>
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            <name>Subject</name>
            <description>The topic of the resource</description>
            <elementTextContainer>
              <elementText elementTextId="5157">
                <text>Boechera, Brassicaceae, genome, assembly, annotation, Apomixis</text>
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            <name>Identifier</name>
            <description>An unambiguous reference to the resource within a given context</description>
            <elementTextContainer>
              <elementText elementTextId="5158">
                <text>DOI: 10.3390/genes9040185</text>
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            </elementTextContainer>
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            <name>Source</name>
            <description>A related resource from which the described resource is derived</description>
            <elementTextContainer>
              <elementText elementTextId="5159">
                <text>Genes</text>
              </elementText>
            </elementTextContainer>
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          <element elementId="45">
            <name>Publisher</name>
            <description>An entity responsible for making the resource available</description>
            <elementTextContainer>
              <elementText elementTextId="5160">
                <text>MDPI AG</text>
              </elementText>
            </elementTextContainer>
          </element>
          <element elementId="38">
            <name>Coverage</name>
            <description>The spatial or temporal topic of the resource, the spatial applicability of the resource, or the jurisdiction under which the resource is relevant</description>
            <elementTextContainer>
              <elementText elementTextId="5161">
                <text>Genetics</text>
              </elementText>
            </elementTextContainer>
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            <name>Language</name>
            <description>A language of the resource</description>
            <elementTextContainer>
              <elementText elementTextId="5162">
                <text>EN</text>
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  <item itemId="556" public="1" featured="0">
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        <src>https://www.socictopen.socict.org/files/original/d567f57946157de137a6733f10701471.pdf</src>
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          <description>The Dublin Core metadata element set is common to all Omeka records, including items, files, and collections. For more information see, http://dublincore.org/documents/dces/.</description>
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            <element elementId="50">
              <name>Title</name>
              <description>A name given to the resource</description>
              <elementTextContainer>
                <elementText elementTextId="1">
                  <text>Coronavirus</text>
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            <element elementId="41">
              <name>Description</name>
              <description>An account of the resource</description>
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                <elementText elementTextId="2">
                  <text>Dominio científico: Coronavirus</text>
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    <itemType itemTypeId="1">
      <name>Text</name>
      <description>A resource consisting primarily of words for reading. Examples include books, letters, dissertations, poems, newspapers, articles, archives of mailing lists. Note that facsimiles or images of texts are still of the genre Text.</description>
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      <elementSet elementSetId="1">
        <name>Dublin Core</name>
        <description>The Dublin Core metadata element set is common to all Omeka records, including items, files, and collections. For more information see, http://dublincore.org/documents/dces/.</description>
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            <name>Title</name>
            <description>A name given to the resource</description>
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                <text>Discovery of Novel Alphacoronaviruses in European Rodents and Shrews</text>
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          <element elementId="39">
            <name>Creator</name>
            <description>An entity primarily responsible for making the resource</description>
            <elementTextContainer>
              <elementText elementTextId="5164">
                <text>Theocharis Tsoleridis, Okechukwu Onianwa, Emma Horncastle, Emma Dayman, Miaoran Zhu, Taechasit Danjittrong, Marta Wachtl, Jerzy M. Behnke, Sarah Chapman, Victoria Strong, Phillipa Dobbs, Jonathan K. Ball, Rachael E. Tarlinton, C. Patrick McClure</text>
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          <element elementId="41">
            <name>Description</name>
            <description>An account of the resource</description>
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              <elementText elementTextId="5165">
                <text>Eight hundred and thirteen European rodents and shrews encompassing seven different species were screened for alphacoronaviruses using PCR detection. Novel alphacoronaviruses were detected in the species Rattus norvegicus, Microtus agrestis, Sorex araneus and Myodes glareolus. These, together with the recently described Lucheng virus found in China, form a distinct rodent/shrew-specific clade within the coronavirus phylogeny. Across a highly conserved region of the viral polymerase gene, the new members of this clade were up to 22% dissimilar at the nucleotide level to the previously described Lucheng virus. As such they might represent distinct species of alphacoronaviruses. These data greatly extend our knowledge of wildlife reservoirs of alphacoronaviruses.</text>
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            <name>Date</name>
            <description>A point or period of time associated with an event in the lifecycle of the resource</description>
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                <text>2016</text>
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            <name>Subject</name>
            <description>The topic of the resource</description>
            <elementTextContainer>
              <elementText elementTextId="5167">
                <text>coronaviruses, Rodents, shrews, alphacoronavirus</text>
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            <name>Identifier</name>
            <description>An unambiguous reference to the resource within a given context</description>
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              <elementText elementTextId="5168">
                <text>DOI: 10.3390/v8030084</text>
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            <name>Source</name>
            <description>A related resource from which the described resource is derived</description>
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                <text>Viruses</text>
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            <name>Publisher</name>
            <description>An entity responsible for making the resource available</description>
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                <text>MDPI AG</text>
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            </elementTextContainer>
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          <element elementId="38">
            <name>Coverage</name>
            <description>The spatial or temporal topic of the resource, the spatial applicability of the resource, or the jurisdiction under which the resource is relevant</description>
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                <text>Microbiology</text>
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            <name>Language</name>
            <description>A language of the resource</description>
            <elementTextContainer>
              <elementText elementTextId="5172">
                <text>EN</text>
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        <src>https://www.socictopen.socict.org/files/original/a4cf58beb2bd96143276feb3e91f865d.pdf</src>
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            <element elementId="50">
              <name>Title</name>
              <description>A name given to the resource</description>
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                  <text>Coronavirus</text>
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            <element elementId="41">
              <name>Description</name>
              <description>An account of the resource</description>
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                  <text>Dominio científico: Coronavirus</text>
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      <name>Text</name>
      <description>A resource consisting primarily of words for reading. Examples include books, letters, dissertations, poems, newspapers, articles, archives of mailing lists. Note that facsimiles or images of texts are still of the genre Text.</description>
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        <name>Dublin Core</name>
        <description>The Dublin Core metadata element set is common to all Omeka records, including items, files, and collections. For more information see, http://dublincore.org/documents/dces/.</description>
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          <element elementId="50">
            <name>Title</name>
            <description>A name given to the resource</description>
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                <text>Records of Copiatestes filiferus (Leukart, in Sars, 1885) Gibson and Bray, 1977 (Digenea) and Gorgorhynchus sp. (Acanthocepahala) of marine fish from peruvian coast</text>
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            <name>Creator</name>
            <description>An entity primarily responsible for making the resource</description>
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              <elementText elementTextId="5174">
                <text>Manuel Tantaleán V, Marianne Lefevre</text>
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          <element elementId="41">
            <name>Description</name>
            <description>An account of the resource</description>
            <elementTextContainer>
              <elementText elementTextId="5175">
                <text>In this paper, Copiatestes filiferus (Leukart, in Sars, 1885) Gibson and Bray, 1977 (Digenea) and Gorgorhynchus sp. (Acanthocephala) parasites of Hemilutjanus macrophthalmos (Teleostei), both parasites are new records from Peru and the fish is a new host.</text>
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            <name>Date</name>
            <description>A point or period of time associated with an event in the lifecycle of the resource</description>
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                <text>2013</text>
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          <element elementId="49">
            <name>Subject</name>
            <description>The topic of the resource</description>
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              <elementText elementTextId="5177">
                <text>Digenea, Acanthocephala, Copiatestes filiferus, Gorgorhynchus sp, Perú</text>
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            </elementTextContainer>
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          <element elementId="43">
            <name>Identifier</name>
            <description>An unambiguous reference to the resource within a given context</description>
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              <elementText elementTextId="5178">
                <text>DOI: 10.15381/rpb.v11i2.2461</text>
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          <element elementId="48">
            <name>Source</name>
            <description>A related resource from which the described resource is derived</description>
            <elementTextContainer>
              <elementText elementTextId="5179">
                <text>Revista Peruana de Biología</text>
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              <name>Title</name>
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                  <text>Dominio científico: Coronavirus</text>
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                <text>In 2007, a novel coronavirus associated with an acute respiratory disease in alpacas (Alpaca Coronavirus, ACoV) was isolated. Full-length genomic sequencing of the ACoV demonstrated the genome to be consistent with other Alphacoronaviruses. A putative additional open-reading frame was identified between the nucleocapsid gene and 3&amp;#039;UTR. The ACoV was genetically most similar to the common human coronavirus (HCoV) 229E with 92.2% nucleotide identity over the entire genome. A comparison of spike gene sequences from ACoV and from HCoV-229E isolates recovered over a span of five decades showed the ACoV to be most similar to viruses isolated in the 1960&amp;amp;#8217;s to early 1980&amp;amp;#8217;s. The true origin of the ACoV is unknown, however a common ancestor between the&amp;amp;#160;ACoV and HCoV-229E appears to have existed prior to the 1960&amp;amp;#8217;s, suggesting virus&amp;amp;#160;transmission, either as a zoonosis or anthroponosis, has occurred between alpacas and humans.</text>
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                <text>alpaca, human, coronavirus, reverse zoonosis, anthroponosis, respiratory, molecular evolution</text>
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                <text>DOI: 10.3390/v4123689</text>
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                <text>Viruses</text>
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                <text>MDPI AG</text>
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                <text>Microbiology</text>
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