https://www.socictopen.socict.org/files/original/69bed7e210cabc3f2c5bf51650f44387.pdf e50f376686fefb3c2616a82d39b12144 Dublin Core The Dublin Core metadata element set is common to all Omeka records, including items, files, and collections. For more information see, http://dublincore.org/documents/dces/. Title A name given to the resource Coronavirus Description An account of the resource Dominio científico: Coronavirus Text A resource consisting primarily of words for reading. Examples include books, letters, dissertations, poems, newspapers, articles, archives of mailing lists. Note that facsimiles or images of texts are still of the genre Text. Dublin Core The Dublin Core metadata element set is common to all Omeka records, including items, files, and collections. For more information see, http://dublincore.org/documents/dces/. Title A name given to the resource Phylogenetic Analysis of HIV-1 Genomes Based on the Position-Weighted K-mers Method Creator An entity primarily responsible for making the resource Yuan-Lin Ma, Zu-Guo Yu, Runbin Tang, Xianhua Xie, Guosheng Han, Vo V. Anh Description An account of the resource HIV-1 viruses, which are predominant in the family of HIV viruses, have strong pathogenicity and infectivity. They can evolve into many different variants in a very short time. In this study, we propose a new and effective alignment-free method for the phylogenetic analysis of HIV-1 viruses using complete genome sequences. Our method combines the position distribution information and the counts of the k-mers together. We also propose a metric to determine the optimal k value. We name our method the Position-Weighted k-mers (PWkmer) method. Validation and comparison with the Robinson&#8722;Foulds distance method and the modified bootstrap method on a benchmark dataset show that our method is reliable for the phylogenetic analysis of HIV-1 viruses. PWkmer can resolve within-group variations for different known subtypes of Group M of HIV-1 viruses. This method is simple and computationally fast for whole genome phylogenetic analysis. Date A point or period of time associated with an event in the lifecycle of the resource 2020 Subject The topic of the resource alignment-free, HIV-1 virus, Phylogenetic analysis, position-weighted <i>k</i>-mers, robinson–foulds distance Identifier An unambiguous reference to the resource within a given context DOI: 10.3390/e22020255 Source A related resource from which the described resource is derived Entropy Publisher An entity responsible for making the resource available MDPI AG Coverage The spatial or temporal topic of the resource, the spatial applicability of the resource, or the jurisdiction under which the resource is relevant Science, Astrophysics, Physics Language A language of the resource EN